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    <title>Journal Article on Justin&#39;s Homepage</title>
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    <managingEditor>info@justinnk.net (Justin Noah Kreikemeyer)</managingEditor>
    <webMaster>info@justinnk.net (Justin Noah Kreikemeyer)</webMaster>
    <copyright>Copyright (c) 2025-2026 Justin Kreikemeyer</copyright>
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      <title>Using (Not-so) Large Language Models to Generate Simulation Models in a Formal DSL: A Study on Reaction Networks</title>
      <link>https://justinnk.net/research/kreikemeyer2025using/</link>
      <pubDate>Sat, 01 Nov 2025 00:00:00 +0200</pubDate><author>info@justinnk.net (Justin Noah Kreikemeyer)</author>
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      <description>&lt;i&gt;Using (Not-so) Large Language Models to Generate Simulation Models in a Formal DSL: A Study on Reaction Networks&lt;/i&gt;.&#xA;&lt;br /&gt;&#xA;&lt;span style=&#34;font-size: 15px&#34;&gt;&#xA;Justin N. Kreikemeyer, Miłosz Jankowski, Pia Wilsdorf, Adelinde M. Uhrmacher. &#xA;2025.&#xA;  ACM Transactions on Modeling and Computer Simulation&#xA;  35, 4 (September 2025), 1-27.&#xA;&lt;/span&gt;&#xA;&lt;br /&gt;&#xA;  &lt;a href=&#34;https://justinnk.net/research/kreikemeyer2025using/kreikemeyer2025using.pdf&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;pdf&lt;/a&gt;&#xA;  |&#xA;  &lt;a href=&#34;https://doi.org/10.1145/3733719&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;doi&lt;/a&gt;|&#xA;  &lt;a href=&#34;https://justinnk.net/research/kreikemeyer2025using/kreikemeyer2025using.bib&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;bib&lt;/a&gt;| &lt;a href=&#34;https://doi.org/10.5281/zenodo.15198397&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;artifacts&lt;/a&gt;| &lt;a href=&#34;https://github.com/justinnk/text-to-crn&#34; target=&#34;_blank&#34;&gt;github&lt;/a&gt;</description>
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      <title>Learning surrogate equations for the analysis of an agent-based cancer model</title>
      <link>https://justinnk.net/research/burrage2025learning/</link>
      <pubDate>Thu, 01 May 2025 00:00:00 +0200</pubDate><author>info@justinnk.net (Justin Noah Kreikemeyer)</author>
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      <description>&lt;i&gt;Learning surrogate equations for the analysis of an agent-based cancer model&lt;/i&gt;.&#xA;&lt;br /&gt;&#xA;&lt;span style=&#34;font-size: 15px&#34;&gt;&#xA;Kevin Burrage, Pamela M. Burrage, Justin N. Kreikemeyer, Adelinde M. Uhrmacher, Hasitha N. Weerasinghe. &#xA;2025.&#xA;  Frontiers in Applied Mathematics and Statistics&#xA;  11 (May 2025).&#xA;&lt;/span&gt;&#xA;&lt;br /&gt;&#xA;  &lt;a href=&#34;https://justinnk.net/research/burrage2025learning/burrage2025learning.pdf&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;pdf&lt;/a&gt;&#xA;  |&#xA;  &lt;a href=&#34;https://doi.org/10.3389/fams.2025.1578604&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;doi&lt;/a&gt;|&#xA;  &lt;a href=&#34;https://justinnk.net/research/burrage2025learning/burrage2025learning.bib&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;bib&lt;/a&gt;| &lt;a href=&#34;https://doi.org/10.5281/zenodo.15240282&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;artifacts&lt;/a&gt;| &lt;a href=&#34;https://github.com/justinnk/cancer-abm-equation-learning&#34; target=&#34;_blank&#34;&gt;github&lt;/a&gt;</description>
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      <title>Challenges and promises of self-adaptive simulation models</title>
      <link>https://justinnk.net/research/uhrmacher2024challenges/</link>
      <pubDate>Sun, 01 Dec 2024 00:00:00 +0200</pubDate><author>info@justinnk.net (Justin Noah Kreikemeyer)</author>
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      <description>&lt;i&gt;Challenges and promises of self-adaptive simulation models&lt;/i&gt;.&#xA;&lt;br /&gt;&#xA;&lt;span style=&#34;font-size: 15px&#34;&gt;&#xA;Adelinde M. Uhrmacher, Pia Wilsdorf, and Justin N. Kreikemeyer. &#xA;2024.&#xA;  SIMULATION&#xA;  100, 12 (December 2024), 1281-1295.&#xA;&lt;/span&gt;&#xA;&lt;br /&gt;&#xA;  &#xA;  &lt;a href=&#34;https://doi.org/10.1177/00375497241296878&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;doi&lt;/a&gt;|&#xA;  &lt;a href=&#34;https://justinnk.net/research/uhrmacher2024challenges/uhrmacher2024challenges.bib&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;bib&lt;/a&gt;</description>
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      <title>Smoothing Methods for Automatic Differentiation Across Conditional Branches</title>
      <link>https://justinnk.net/research/kreikemeyer2023smoothing/</link>
      <pubDate>Wed, 01 Nov 2023 00:00:00 +0200</pubDate><author>info@justinnk.net (Justin Noah Kreikemeyer)</author>
      <guid>https://justinnk.net/research/kreikemeyer2023smoothing/</guid>
      <category>research</category><category>journal article</category>
      <description>&lt;i&gt;Smoothing Methods for Automatic Differentiation Across Conditional Branches&lt;/i&gt;.&#xA;&lt;br /&gt;&#xA;&lt;span style=&#34;font-size: 15px&#34;&gt;&#xA;Justin N. Kreikemeyer, Philipp Andelfinger. &#xA;2023.&#xA;  IEEE Access&#xA;  11, 143190-143211.&#xA;&lt;/span&gt;&#xA;&lt;br /&gt;&#xA;  &lt;a href=&#34;https://justinnk.net/research/kreikemeyer2023smoothing/kreikemeyer2023smoothing.pdf&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;pdf&lt;/a&gt;&#xA;  |&#xA;  &lt;a href=&#34;https://doi.org/10.1109/ACCESS.2023.3342136&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;doi&lt;/a&gt;|&#xA;  &lt;a href=&#34;https://justinnk.net/research/kreikemeyer2023smoothing/kreikemeyer2023smoothing.bib&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;bib&lt;/a&gt;| &lt;a href=&#34;https://doi.org/10.5281/zenodo.10288016&#34; target=&#34;_blank&#34; rel=&#34;noopener noreferrer&#34;&gt;artifacts&lt;/a&gt;| &lt;a href=&#34;https://github.com/DiscoGrad/DiscoGrad&#34; target=&#34;_blank&#34;&gt;github&lt;/a&gt;</description>
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